BtaEX6046596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99548346-99549629:+
Coord C1 exon
chr11:99548346-99548444
Coord A exon
chr11:99548672-99548806
Coord C2 exon
chr11:99549576-99549629
Length
135 bp
Sequences
Splice sites
3' ss Seq
AGCACCGCCTGGCCCTGCAGGTG
3' ss Score
8.26
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGCCCCAAAGGCTTCCTGGAGAGCTACGAGGAGATGCTGAGCTATGCCCTGCGGCCGGAGACCTGGGCCACCACGAGGCTGGAGCTGGAGGGCCGAGGG
Seq A exon
GTGGTGTGCATGAGCTTCTTTGACATCGTGCTGGATTTTATCCTCATGGACGCCTTCGAGGACCTGGAGAACCCCCCGTCCTCGGTGCTCGCCGTCCTGAGGAACCGCTGGCTGTCAGACAGCTTCAAGGAGACG
Seq C2 exon
GCCCTGGCCACTGCCTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653-'15-20,'15-18,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.9=100)
A:
PF102654=DUF2217=FE(8.2=100)
C2:
PF102654=DUF2217=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTTCCTGGAGAGCTACG
R:
CATCAGCAGCCTCCTCTTGG
Band lengths:
146-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]