HsaEX0024626 @ hg38
Exon Skipping
Gene
ENSG00000148343 | MIGA2
Description
mitoguardin 2 [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr9:129067773-129069129:+
Coord C1 exon
chr9:129067773-129067871
Coord A exon
chr9:129068198-129068332
Coord C2 exon
chr9:129069076-129069129
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCGGGGGCACCCTCTGTAGGTG
3' ss Score
5.98
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGCCCCAAAGGCTTCCTGGAGAGCTACGAGGAGATGCTGAGCTATGCCCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGAGGGCCGAGGG
Seq A exon
GTGGTATGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGACGCCTTCGAGGACCTGGAGAACCCTCCGGCCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGACAGCTTCAAGGAGACG
Seq C2 exon
GCCTTGGCCACTGCTTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-'46-86,'46-80,49-86=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(42.7=100)
A:
PF102654=DUF2217=FE(10.0=100)
C2:
PF102654=DUF2217=FE(3.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTTCCTGGAGAGCTACG
R:
CATCAGCAGCCTCCTCTTGG
Band lengths:
146-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development