RnoEX0054552 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8947167-8948682:+
Coord C1 exon
chr3:8947167-8947265
Coord A exon
chr3:8947470-8947604
Coord C2 exon
chr3:8948629-8948682
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATGCCCCCTCTTCTCTAAAGGTG
3' ss Score
8.67
5' ss Seq
ACAGTGGGT
5' ss Score
2.99
Exon sequences
Seq C1 exon
AGTCCCAAGGGCTTCCTGGAGAGCTACGAGGAGATGTTGAACTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGTTGGAGCTGGAGGGCAGAGGG
Seq A exon
GTGGCATGCATGAGCTTCTTCGACATCGTGTTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCATCTTCGGTGCTTGCTGTCCTGCGGAACCGTTGGCTGTCTGATAGCTTCAAGGAAACA
Seq C2 exon
GCCCTGGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513-'27-29,'27-27,29-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.0=100)
A:
PF102654=DUF2217=FE(9.6=100)
C2:
PF102654=DUF2217=FE(3.7=100),PF102654=DUF2217=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCTTCCTGGAGAGCTA
R:
CATCAGAAGCCTCCTCTTGG
Band lengths:
148-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]