MmuEX6100264 @ mm10
Exon Skipping
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30381638-30383019:+
Coord C1 exon
chr2:30381638-30381736
Coord A exon
chr2:30381939-30382073
Coord C2 exon
chr2:30382966-30383019
Length
135 bp
Sequences
Splice sites
3' ss Seq
GATGCCCCTCTTCCCCGAAGGTG
3' ss Score
8.39
5' ss Seq
ACAGTGGGT
5' ss Score
2.99
Exon sequences
Seq C1 exon
AGTCCCAAAGGCTTCCTGGAGAGCTATGAGGAGATGCTGAGCTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGCTGGAGCTGGAGGGCAGAGGG
Seq A exon
GTGGCCTGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCGTCTTCGGTGCTTGCTGTCCTGAGGAACCGCTGGCTGTCTGACAGCTTCAAAGAAACA
Seq C2 exon
GCCCTAGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTCCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.9=100)
A:
PF102654=DUF2217=FE(60.3=100)
C2:
PF102654=DUF2217=FE(23.3=100),PF102654=DUF2217=PU(2.2=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAAGGCTTCCTGGAGAG
R:
CCTCCTCTTGGCTTTCAGGAC
Band lengths:
142-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types