DreEX0031960 @ danRer10
Exon Skipping
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3711142-3713749:+
Coord C1 exon
chr21:3711142-3711240
Coord A exon
chr21:3712903-3713037
Coord C2 exon
chr21:3713696-3713749
Length
135 bp
Sequences
Splice sites
3' ss Seq
GACCTTTGATTTTGTTCCAGGTT
3' ss Score
9.12
5' ss Seq
ACTGTACGC
5' ss Score
3.13
Exon sequences
Seq C1 exon
AGTCCGAAGGCGTTTCTGGAGAGTTATGAAGACATGCTGCAGTACACACAGAGAGAAGAAACATGGCCCGTCAGCAAGATGGAGCTGGAAGGACGTGGG
Seq A exon
GTTGTCTGTATGAACTTCTTTGACATCGTGTTGGACTTTATCCTCATGGATGCGTTCGAGGATCTGGAAAGTCCTCCGTCTTCAGTGGTCGCAGTTCTGAGGAACAGATGGCTCTCGGACAGTTTTAAAGAGACT
Seq C2 exon
GCATTGGCTACAGCCTGTTGGTCTGTGCTGAAAGCTAAAAGAAGATTACTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.0=100)
A:
PF102654=DUF2217=FE(9.6=100)
C2:
PF102654=DUF2217=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGCGTTTCTGGAGAGTT
R:
GCTTTCAGCACAGACCAACAG
Band lengths:
130-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]