BtaEX6046701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100767561-100769874:+
Coord C1 exon
chr11:100767561-100767710
Coord A exon
chr11:100769496-100769633
Coord C2 exon
chr11:100769753-100769874
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCCACCCCCATCCAGGGC
3' ss Score
8.69
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGAGCCCCGGGGGAGCCGGGGCAGCATGATCGGGGTGATCAACGGCCAGAAATTTGGTGCAGCCGTCCTCAACACCAGCGTGCAACAGGAGGCACGTTCCGGGGTCCCCACAATCCACAGCAGCATCAGCCACATCCCCACAAGTGTGG
Seq A exon
GGCCTCTGATGCGGGTGCTCGTGGTCACCATCGCCCCCATCTACTGGGCCCTGGCTGGAGAGAGTGGAGACGCCCTTAACGGCCACTCCCTGACGGGTGGCAGCTTCCAGCAGGAGTCACATGTGGAATTTGCCACAG
Seq C2 exon
GGGAGCTGCTCACTATGACCCAGGTGGCCCGGGGCCTGGATCCCAACGGCCTCCTGCTCCTCGATGTGGTGGTCAATGGCATCGTCCCCGAGAGCCTAGCGGATGCAGATCTGCAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'93-101,'93-100,94-101=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(26.6=100)
A:
PF074747=G2F=FE(24.5=100)
C2:
PF074747=G2F=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCATGATCGGGGTGAT
R:
AGATCTGCATCCGCTAGGCTC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]