RnoEX6016386 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10391947-10394276:-
Coord C1 exon
chr3:10394127-10394276
Coord A exon
chr3:10392165-10392302
Coord C2 exon
chr3:10391947-10392068
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCATTCTGCTCTACCCAGGGC
3' ss Score
6.84
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGCCCCGGGGCAGTCGGGGCAGCATGATCGGAGTCATCAATGGCCAGGAATTGGGAATGGCTACTCTCAACATCAGTGTGCGACAGCAGGGCGGTTCTGAGCTCCCTACCATCTGGAGCAGCATCAGTCATGTCCCAGCAAGTGTGG
Seq A exon
GGCCTCTGATGCGGGTGCTGGTGGTCACTATTTCTCCCATCTACTGGGCCCTGGCTAGAGAGAGCGGAGAGGCCTTAAACGGTTACTCCCTGACCGGCGGCAACTTCCAGCAGGAGTCACAAATGGAGTTTTCTACAG
Seq C2 exon
GGGAGCTGCTCACAATGACCCAGGTGGCTCGGGGACTGGATCCTGATGGGTTCCTTCTTGTGAACATGAAAATCAGTGGCATGATCCCAGAGAGCCTGGCCGACGCAGATCTACACGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252-'32-39,'32-38,33-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCATGATCGGAGTCATC
R:
CTGCACGTGTAGATCTGCGTC
Band lengths:
252-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]