DreEX6046290 @ danRer10
Exon Skipping
Gene
ENSDARG00000016936 | hmcn1
Description
hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]
Coordinates
chr20:34265808-34266607:-
Coord C1 exon
chr20:34266461-34266607
Coord A exon
chr20:34266009-34266146
Coord C2 exon
chr20:34265808-34265929
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCTAAATTTTTAGGGC
3' ss Score
10.87
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGGCCCTCAGAAAGCCAGAGGAAGTATCATTGGGAACATTAATGATGTGGAGTTTGGCATTTCCATCCTCAATGCCACCATCACCAGCAGTTCTACTGGAGGAAAAGTTATACAGGCCACCATCACTAATATACCAAGGAGTCTGG
Seq A exon
GGCCTGCTATGAGGAAGCTGATATCCATCCTGAACCCAATATACTGGACCACAGCACATGAGCTGGGTGAAGCTGTCAATGGCTTCACCCTCACTGACGGCATTTTCAGACGTGAGACTCAGGTGGAGTTTGCCACAG
Seq C2 exon
GAGAGATTTTGAGAATGACCCATGTGGCACGAGGGCTGGACTCAGATGGAGCACTTCTACTGGACATTGTAGTAAATGGACACATTCTGCAGCTGCCGTCCAACGCTGACATCAGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016936-'107-104,'107-103,108-104=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(26.2=100)
A:
PF074747=G2F=FE(24.6=100)
C2:
PF074747=G2F=FE(21.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAGAAAGCCAGAGGAAG
R:
CTGATGTCAGCGTTGGACGG
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]