MmuEX6028137 @ mm10
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:150593912-150595996:-
Coord C1 exon
chr1:150595847-150595996
Coord A exon
chr1:150595119-150595256
Coord C2 exon
chr1:150593912-150594033
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCTTTCTTCTCTAGGTC
3' ss Score
14.19
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGGACCCCAGCGAGCCAGAGGAAGTGTTATTGGAAATATTAATGATATTGAGTTTGGAATCGCTTTCCTAAATGCCACAATAACAGATAGCCCTAACACTGATACAAGAGTAATACAGGCCAAGATTACCAATGTGCCTCGCAGTCTTG
Seq A exon
GTCCAGCAATGAGAAAGATCATTTCTATCCTAAATCCCATTTACTGGACCACAGCAAAGGAAATAGGGGAAGCAGTTAATGGCTTTACCCTCACTAACGCAGTCTTCAAAAGAGAGACGCAAGTGGAATTTGCAACTG
Seq C2 exon
GAGAGGTCTTGCGGATGACACACGTGGCTCGGGGCTTAGACTCCGACGGCGCCTTGCTGCTTGATGTCATTGTGAGTGGCCAGGTCCTACAGCTCCACTCACCTGCTGAAGTCGGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'103-107,'103-106,104-107=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(26.6=100)
A:
PF074747=G2F=FE(24.5=100)
C2:
PF074747=G2F=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGCCAGAGGAAGTGTTA
R:
GTGAGTGGAGCTGTAGGACCT
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types