RnoEX0042105 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67933642-67935719:-
Coord C1 exon
chr13:67935570-67935719
Coord A exon
chr13:67934853-67934990
Coord C2 exon
chr13:67933642-67933763
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCCTGCTTCTCTAGGTC
3' ss Score
11.7
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGGACCCCAACGAGCCAGAGGGAGTGTTATTGGGAATATTAATGATATTGAGTTTGGAATCGCTTTCCTTAATGCCACAATAACAGATAGCCCTAACTCTGATACAAGAATAATACAGGCCACGATTACCAATGTGCCTCGCAGTCTGG
Seq A exon
GTCCAGCAATGAGAAAGATCATTTCTATCCTAAATCCCATTTACTGGACCACAGCAAAGGAAATAGGGGAAGCAGTCAATGGCTTTACCCTCACTAACGCAGTCTTCAAAAGAGAGACGCAAGTGGAATTTGCAACTG
Seq C2 exon
GAGAGGTCTTGAGGATGACACATGTGGCTCGGGGCTTAGATTCCGACGGCGCATTGCTGCTTGACGTCATTGTGAGTGGCCATGTCCTGCAGCTCCACTCACCTGCTGAAGTTAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'113-112,'113-110,114-112
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(26.6=100)
A:
PF074747=G2F=FE(24.5=100)
C2:
PF074747=G2F=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAGCCAGAGGGAGTGTTA
R:
CTTCAGCAGGTGAGTGGAGCT
Band lengths:
252-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]