MmuEX6100339 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31450808-31453164:+
Coord C1 exon
chr2:31450808-31450957
Coord A exon
chr2:31452810-31452947
Coord C2 exon
chr2:31453043-31453164
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTGCTACATCCAGGGC
3' ss Score
7.38
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGCCCCGGGGCAGCCGGGGCAGCATGACTGGAGTCATCAATGGTCAGGAATTTGGAATGGCTACTCTCAACATCAGTGTGCTACAGCAGGGCAGCTCTGAGGCTCCAACCATCTGGAGCAGCATCAGTCAAGTCCCAGCAAGTGTGG
Seq A exon
GGCCTCTAATGCGGGTGCTGGTGGTCACGATTGCCCCCATCTACTGGGCCCTGGCTAGAGAGAGCGGAGAGGCCTTAAATGGCTACTCTCTGACGGGTGGCAGCTTCCAGCAGGAGTCACAGATGGAATTTTCTACAG
Seq C2 exon
GGGAGCTACTCACAATGACCCAGGTGGCTCGGGGCCTGGATCCTGATGGACTCCTGCTCGTGGACATGAAAATCAATGGCATGATCCCAGAGAGCCTGGCTGACGGAGATCTGCGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'118-121,'118-118,119-121
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(26.6=100)
A:
PF074747=G2F=FE(24.5=100)
C2:
PF074747=G2F=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGTCATCAATGGTCAGGA
R:
TGTACTCGCAGATCTCCGTCA
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types