MmuEX6100339 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31306328-31308684:+
Coord C1 exon
chr2:31306328-31306477
Coord A exon
chr2:31308330-31308467
Coord C2 exon
chr2:31308563-31308684
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTGCTACATCCAGGGC
3' ss Score
7.38
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGCCCCGGGGCAGCCGGGGCAGCATGACTGGAGTCATCAATGGTCAGGAATTTGGAATGGCTACTCTCAACATCAGTGTGCTACAGCAGGGCAGCTCTGAGGCTCCAACCATCTGGAGCAGCATCAGTCAAGTCCCAGCAAGTGTGG
Seq A exon
GGCCTCTAATGCGGGTGCTGGTGGTCACGATTGCCCCCATCTACTGGGCCCTGGCTAGAGAGAGCGGAGAGGCCTTAAATGGCTACTCTCTGACGGGTGGCAGCTTCCAGCAGGAGTCACAGATGGAATTTTCTACAG
Seq C2 exon
GGGAGCTACTCACAATGACCCAGGTGGCTCGGGGCCTGGATCCTGATGGACTCCTGCTCGTGGACATGAAAATCAATGGCATGATCCCAGAGAGCCTGGCTGACGGAGATCTGCGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'93-93,'93-92,94-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=PU(23.0=97.6)
A:
PF074747=G2F=FE(25.8=100)
C2:
PF074747=G2F=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGTCATCAATGGTCAGGA
R:
TGTACTCGCAGATCTCCGTCA
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: