BtaEX6046795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100933919-100937774:+
Coord C1 exon
chr11:100933919-100934017
Coord A exon
chr11:100936566-100936670
Coord C2 exon
chr11:100937672-100937774
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTATCTGTGTTTATGCAGCAA
3' ss Score
8.57
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GAGCGGACCGGTGTGAAGATGGTCATGATTCAGGACGGCCCATTGCCCACAGGAGCAGACAAGCCCCTTCGCATCACCGGAGACCCGTTTAAAGTTCAG
Seq A exon
CAAGCGAGAGAAATGGTCTTAGAAATCATCCGAGAGAAAGACCAAGCTGACTTTCGAGGTGTGCGCGGTGATTTCAGCTCTCGAATGGGAGGAGGCAGTATAGAG
Seq C2 exon
GTGTCTGTGCCTAGGTTTGCTGTCGGGATTGTAATAGGAAGAAACGGGGAAATGATCAAAAAGATCCAGAACGATGCCGGTGTGAGAATTCAGTTCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072-'16-14,'16-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=0.171 C2=0.171
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=14.3),PF0001324=KH_1=PU(3.2=5.7)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGACCGGTGTGAAGAT
R:
CTGGTTTGAACTGAATTCTCACACC
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]