RnoEX6016362 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10234243-10237917:-
Coord C1 exon
chr3:10237819-10237917
Coord A exon
chr3:10235478-10235582
Coord C2 exon
chr3:10234243-10234345
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTCTTTTTACAGCAA
3' ss Score
10.78
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GAGCGGACAGGTGTGAAAATGGTCATGATCCAGGATGGCCCGCTACCCACAGGAGCAGACAAGCCTCTCCGCATCACTGGAGATCCATTTAAAGTACAG
Seq A exon
CAAGCAAGAGAAATGGTCTTAGAAATCATCCGAGAGAAAGACCAGGCTGACTTCCGGGGCGTGCGCAGTGACTTCACCTCCCGAGCGGGAGGAGGTAGTATAGAG
Seq C2 exon
GTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGAAACGGAGAAATGATTAAGAAGATCCAGAATGATGCTGGTGTGAGGATCCAGTTCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139-'11-17,'11-14,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.626 A=0.152 C2=0.181
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=14.3),PF0001324=KH_1=PU(3.2=5.7)
C2:
PF0001324=KH_1=PU(56.7=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGACAGGTGTGAAAATG
R:
CTGGTTTGAACTGGATCCTCACA
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]