DreEX6025619 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8856054-8856574:+
Coord C1 exon
chr2:8856054-8856152
Coord A exon
chr2:8856267-8856377
Coord C2 exon
chr2:8856472-8856574
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACTATTTTTTTTATGTACAGCAA
3' ss Score
6.26
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAACGGGCTGGAGTCAAAATGGTGATGATTCAAGATGGACCCCAAAACACAGGCGCTGATAAACCACTCAGGATCTCTGGTGATCCTTTCAAAGTTCAG
Seq A exon
CAAGCTAAAGACATGGTAATGGATCTGATTAGAGATCAGGGTTTTCGTGAACAGAGAGGAGAGTATGGCTCTAGAGCAGGTGGTGGTGGTGGAGGAGGAGAGAGTTTGGAT
Seq C2 exon
GTCCCTGTGCCAAGGTTTGCTGTGGGTATTGTGATTGGCCGGAGTGGCGAAATGATCAAGAAGATTCAGAATGATACTGGTGTGAGGATTCAGTTCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.838 C2=0.371
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=13.5),PF0001324=KH_1=PU(3.2=5.4)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGCTGGAGTCAAAATG
R:
CTGGTTTGAACTGAATCCTCACAC
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]