HsaEX6031735 @ hg19
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004]
Coordinates
chr1:78429939-78430653:-
Coord C1 exon
chr1:78430555-78430653
Coord A exon
chr1:78430331-78430432
Coord C2 exon
chr1:78429939-78430041
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTAACTTTTTCTGCTTTAGCAA
3' ss Score
6.59
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAACGGGCTGGAGTTAAAATGGTTATGATTCAAGACGGGCCGCAGAACACTGGTGCTGACAAACCTCTTAGGATTACAGGAGACCCATATAAAGTTCAA
Seq A exon
CAAGCCAAGGAAATGGTGTTAGAGTTAATTCGTGATCAAGGCGGTTTCAGAGAAGTTCGGAATGAGTATGGGTCAAGAATAGGAGGAAATGAAGGGATAGAT
Seq C2 exon
GTCCCCATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAGATGATCAAAAAAATACAAAATGATGCTGGTGTTCGCATTCAGTTTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.294 C2=0.343
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(58.5=56.7),PF0001324=KH_1=PU(3.2=3.0)
A:
PF0001324=KH_1=PD(7.7=7.2),PF0001324=KH_1=PU(58.7=53.6)
C2:
PF0001324=KH_1=PD(93.7=86.8),PF0395812=Secretin_N=PU(13.9=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGCTGGAGTTAAAATGG
R:
CTGGCTTAAACTGAATGCGAACA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)