RnoEX0037082 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257435137-257435774:+
Coord C1 exon
chr2:257435137-257435235
Coord A exon
chr2:257435351-257435448
Coord C2 exon
chr2:257435672-257435774
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAACTTTCTATTATAGCAAGCCA
3' ss Score
-5.81
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAAAGGGCTGGTGTTAAAATGGTTATGATTCAAGATGGGCCTCAAAACACTGGTGCTGATAAACCTCTTAGGATTACGGGTGACCCATACAAAGTTCAG
Seq A exon
CCAAGGAAATGGTATTAGAATTAATTCGCGATCAAGGTGGTTTCAGAGAAGTGCGGAATGAGTATGGCTCCAGAATAGGAGGAAATGAAGGGATAGAT
Seq C2 exon
GTCCCAATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAAATGATTAAAAAAATACAAAATGATGCTGGTGTTCGAATTCAGTTTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'13-17,'13-16,14-17
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.294 C2=0.343
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=14.7),PF0001324=KH_1=PU(3.2=5.9)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCCTCAAAACACTGGTG
R:
TGGCTTAAACTGAATTCGAACACC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]