BtaEX6016944 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66975188-66975869:+
Coord C1 exon
chr3:66975188-66975288
Coord A exon
chr3:66975414-66975515
Coord C2 exon
chr3:66975767-66975869
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTTGTACTTCAGCAA
3' ss Score
5.61
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGAACGGGCTGGAGTTAAAATGGTTATGATCCAAGATGGACCTCAGAATACTGGTGCTGACAAACCTCTTAGGATTACAGGAGACCCATACAAAGTTCAA
Seq A exon
CAAGCCAAGGAGATGGTGTTAGAGTTAATTCGTGATCAAGGTGGTTTCAGAGAAGTTCGGAATGAGTATGGGTCAAGAATAGGAGGAAATGAAGGAATAGAT
Seq C2 exon
GTCCCCATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAGATGATTAAAAAAATACAAAATGATGCTGGTGTTCGAATTCAGTTTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.324 C2=0.343
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(51.6=100)
A:
PF0001324=KH_1=PD(7.8=14.7),PF0001324=KH_1=PU(3.2=5.9)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACGGGCTGGAGTTAAAA
R:
GGCTTAAACTGAATTCGAACACCA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]