MmuEX6074748 @ mm9
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:151882897-151883531:+
Coord C1 exon
chr3:151882897-151882995
Coord A exon
chr3:151883100-151883201
Coord C2 exon
chr3:151883429-151883531
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGATAACTTTCTATTATAGCAA
3' ss Score
6.36
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAACGGGCTGGTGTTAAAATGGTAATGATTCAAGATGGGCCTCAAAACACTGGTGCTGATAAACCTCTTAGGATTACGGGTGACCCATACAAAGTTCAG
Seq A exon
CAAGCCAAGGAAATGGTATTAGAGTTAATTCGTGATCAAGGTGGTTTCAGAGAAGTGCGGAATGAGTATGGCTCAAGAATAGGAGGCAATGAAGGGATAGAT
Seq C2 exon
GTCCCAATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAAATGATTAAAAAAATACAAAATGATGCTGGTGTTCGAATTCAGTTTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.294 C2=0.343
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=14.7),PF0001324=KH_1=PU(3.2=5.9)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGCTGGTGTTAAAATGG
R:
CTGGCTTAAACTGAATTCGAACACC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: