HsaEX6031735 @ hg38
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77964254-77964968:-
Coord C1 exon
chr1:77964870-77964968
Coord A exon
chr1:77964646-77964747
Coord C2 exon
chr1:77964254-77964356
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTAACTTTTTCTGCTTTAGCAA
3' ss Score
6.59
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAACGGGCTGGAGTTAAAATGGTTATGATTCAAGACGGGCCGCAGAACACTGGTGCTGACAAACCTCTTAGGATTACAGGAGACCCATATAAAGTTCAA
Seq A exon
CAAGCCAAGGAAATGGTGTTAGAGTTAATTCGTGATCAAGGCGGTTTCAGAGAAGTTCGGAATGAGTATGGGTCAAGAATAGGAGGAAATGAAGGGATAGAT
Seq C2 exon
GTCCCCATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAGATGATCAAAAAAATACAAAATGATGCTGGTGTTCGCATTCAGTTTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'18-19,'18-16,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=0.288 C2=0.314
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=14.7),PF0001324=KH_1=PU(3.2=5.9)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGCTGGAGTTAAAATGG
R:
CTGGCTTAAACTGAATGCGAACA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains