DreEX6033897 @ danRer10
Exon Skipping
Gene
ENSDARG00000026489 | khsrp
Description
KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
Coordinates
chr1:54288082-54288828:-
Coord C1 exon
chr1:54288730-54288828
Coord A exon
chr1:54288262-54288396
Coord C2 exon
chr1:54288082-54288184
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTCTCCCTCTAGCAA
3' ss Score
11.35
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GAGCGAGCTGGTGTGAAGATGATTTTGATCCAGGACGCTTCTCAGGGGCCAAACATGGACAAACCACTGCGCATTATTGGAGACCCTTACAAAGTCCAG
Seq A exon
CAAGCCCGTGAGATGGTGCAGGAGATTCTGCGAGAGCGGGATCATCCGGGCTTCGAGAGGAATGAGTATGGCTCTCGAATGGGTGGTGGAGGAGGTGGAGGCGGCGGTGGTGGAGGTGGCGGCGGTGGAATTGAG
Seq C2 exon
GTTCCAGTTCCACGTCACTCTGTGGGTGTCGTGATTGGCCGAAGCGGAGAGATGATCAAGAAGATTCAGAATGACGCCGGCGTGAGGATACAGTTCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026489-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.956 C2=0.829
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=11.1),PF0001324=KH_1=PU(3.2=4.4)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAGCTGGTGTGAAGATG
R:
CTGGTTTGAACTGTATCCTCACG
Band lengths:
202-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]