MmuEX6078681 @ mm10
Exon Skipping
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57024789-57025406:-
Coord C1 exon
chr17:57025308-57025406
Coord A exon
chr17:57024980-57025078
Coord C2 exon
chr17:57024789-57024891
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCAGTATGGTATGTTTACAGCAA
3' ss Score
4.54
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAGCGGGCTGGGGTGAAGATGATTTTAATTCAGGATGGCTCCCAGAACACAAATGTGGACAAGCCACTGCGGATTATCGGGGACCCATACAAAGTACAG
Seq A exon
CAAGCCTGTGAGATGGTGATGGACATCCTGCGAGAACGTGACCAAGGTGGCTTTGGGGACCGCAATGAATACGGATCTCGAGTTGGTGGAGGCATTGAT
Seq C2 exon
GTGCCTGTACCCAGGCATTCAGTTGGTGTAGTCATTGGCCGGAGTGGAGAGATGATCAAGAAGATCCAGAATGATGCCGGTGTGCGCATCCAGTTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670-'16-17,'16-15,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.667 C2=0.343
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=15.2),PF0001324=KH_1=PU(3.2=6.1)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGGGTGAAGATGATTT
R:
CACACCGGCATCATTCTGGAT
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types