BtaEX6038726 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021018 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr7:19266206-19266966:+
Coord C1 exon
chr7:19266206-19266304
Coord A exon
chr7:19266645-19266743
Coord C2 exon
chr7:19266864-19266966
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACACTTTGTATGTTCGCAGCAA
3' ss Score
7.06
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAACGGGCTGGAGTGAAGATGATTTTAATCCAGGATGGCTCCCAGAACACGAATGTGGACAAACCGCTGCGGATCATCGGAGACCCTTACAAAGTGCAG
Seq A exon
CAAGCCTGCGAAATGGTGATGGACATCCTGCGGGAGCGTGACCAGGGTGGCTTTGGAGACCGGAACGAGTATGGGTCCCGGATCGGCGGGGGCATCGAC
Seq C2 exon
GTGCCAGTGCCCAGGCATTCTGTGGGTGTGGTCATCGGCCGGAGTGGGGAGATGATCAAGAAGATCCAGAATGACGCTGGTGTTCGGATACAGTTTAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021018-'10-16,'10-14,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.636 C2=0.400
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=15.2),PF0001324=KH_1=PU(3.2=6.1)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCAGGATGGCTCCCAGAA
R:
AACTGTATCCGAACACCAGCG
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]