RnoEX0046682 @ rn6
Exon Skipping
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10019303-10019919:+
Coord C1 exon
chr9:10019303-10019401
Coord A exon
chr9:10019631-10019729
Coord C2 exon
chr9:10019817-10019919
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCAGTGTGGTATGTTCACAGCAA
3' ss Score
4.94
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAGCGGGCTGGGGTGAAGATGATTTTAATTCAGGACGGCTCCCAGAACACAAATGTGGACAAGCCGCTGCGGATTATTGGGGACCCATACAAAGTACAG
Seq A exon
CAAGCCTGTGAGATGGTGATGGACATCCTGCGAGAACGTGACCAGGGTGGCTTTGGGGACCGCAATGAATACGGATCTCGGGTTGGCGGAGGCATCGAT
Seq C2 exon
GTGCCTGTACCCCGGCATTCGGTTGGTGTGGTCATTGGCCGGAGTGGAGAGATGATCAAGAAGATCCAGAATGATGCTGGTGTGCGCATCCAGTTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.667 C2=0.343
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=15.2),PF0001324=KH_1=PU(3.2=6.1)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGGGTGAAGATGATTT
R:
GCACACCAGCATCATTCTGGA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]