GgaEX1025668 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5932109-5934732:+
Coord C1 exon
chr17:5932109-5932207
Coord A exon
chr17:5934152-5934256
Coord C2 exon
chr17:5934630-5934732
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAACTTCTTTCCCCATGTAGCAA
3' ss Score
7.92
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GAGCGAACAGGTGTGAAAATGATTATGATCCAAGATGGTCCAATGCCTACTGGAGCAGATAAACCTCTCCGTATTACTGGAGATGCATTTAAAGTACAG
Seq A exon
CAAGCAAGGGAAATGGTACTGGAGATCATCCGAGAGAAAGATCAGGCAGACTTCCGAGGCGTACGCAATGATTTCAGTTCTAGAATGGGAGGAGGCAGCATAGAG
Seq C2 exon
GTCTCTGTGCCCAGGTTTGCTGTTGGAATTGTGATAGGAAGAAATGGAGAAATGATCAAAAAGATTCAGAATGATGCTGGAGTTAGGATTCAATTTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941-'23-21,'23-20,25-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=0.086 C2=0.171
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=14.3),PF0001324=KH_1=PU(3.2=5.7)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAACAGGTGTGAAAATGA
R:
CTGGTTTAAATTGAATCCTAACTCCA
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]