HsaEX6063522 @ hg38
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130617797-130622810:+
Coord C1 exon
chr9:130617797-130617895
Coord A exon
chr9:130620354-130620458
Coord C2 exon
chr9:130622708-130622810
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTGTTTATGCAGCAA
3' ss Score
7.96
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GAGCGGACAGGGGTGAAGATGGTCATGATCCAGGATGGCCCATTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAG
Seq A exon
CAAGCAAGAGAAATGGTACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCTCGAATGGGAGGAGGCAGTATAGAG
Seq C2 exon
GTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAACGGGGAAATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-'28-37,'28-33,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.086 C2=0.171
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(49.2=100)
A:
PF0001324=KH_1=PD(7.7=14.3),PF0001324=KH_1=PU(3.2=5.7)
C2:
PF0001324=KH_1=FE(54.0=100)
Main Skipping Isoform:
ENST00000319725fB2832
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGACAGGGGTGAAGAT
R:
CTGGTTTAAACTGAATCCTCACACC
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains