BtaEX6046808 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017976 | ABL1
Description
Bos taurus c-abl oncogene 1, non-receptor tyrosine kinase (ABL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206860]
Coordinates
chr11:101140394-101144689:+
Coord C1 exon
chr11:101140394-101140578
Coord A exon
chr11:101142887-101143039
Coord C2 exon
chr11:101144600-101144689
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTCTTTCTTTTAGCAT
3' ss Score
10.37
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
AGATCTTGCTGCCCGAAACTGCCTGGTAGGGGAAAACCACTTGGTGAAGGTGGCTGATTTTGGCCTGAGCAGGCTGATGACAGGGGACACCTACACAGCCCACGCCGGGGCCAAGTTCCCCATCAAGTGGACGGCGCCCGAGAGCCTGGCCTACAACAAGTTCTCCATCAAGTCGGACATCTGGG
Seq A exon
CATTTGGAGTGTTGCTTTGGGAAATTGCTACCTATGGCATGTCACCTTACCCAGGAATTGACCTGTCCCAGGTGTATGAGCTGTTGGAGAAAGACTACCGCATGGAGCGCCCAGAAGGCTGCCCAGAGAAGGTCTACGAACTCATGCGAGCAT
Seq C2 exon
GTTGGCAGTGGAATCCCTCTGACCGGCCCTCCTTCGCTGAGATCCACCAAGCCTTTGAAACGATGTTCCAGGAATCCAGCATATCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017976-'13-17,'13-14,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(24.6=100)
A:
PF0771412=Pkinase_Tyr=FE(20.2=100)
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTGCTGCCCGAAACTG
R:
TCGTTTCAAAGGCTTGGTGGA
Band lengths:
248-401
Functional annotations
There are 1 annotated functions for this event
PMID: 9168116
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mass detection of residue modification, mutation analysis. ELM ID: ELMI000950; ELM sequence: IDLSQVY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]