GgaEX6015201 @ galGal3
Exon Skipping
Gene
ENSGALG00000003875 | ABL1
Description
NA
Coordinates
chr17:6643449-6646491:+
Coord C1 exon
chr17:6643449-6643633
Coord A exon
chr17:6645665-6645817
Coord C2 exon
chr17:6646402-6646491
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCTACCCACTGCAGCCT
3' ss Score
7.3
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AGACCTCGCTGCCAGAAACTGCCTTGTAGGGGAGAACCACTTGGTGAAGGTGGCAGACTTTGGCCTGAGCAGGCTGATGACAGGTGACACGTACACTGCCCACGCTGGGGCCAAATTCCCAATCAAGTGGACAGCACCAGAGAGCCTGGCCTACAACAAGTTCTCCATTAAATCTGATGTCTGGG
Seq A exon
CCTTTGGTGTTCTGCTGTGGGAAATTGCGACCTATGGCATGTCCCCTTACCCTGGGATCGACCTGTCTCAAGTCTATGAGCTGCTGGAGAAAGACTACCGCATGGAGCGCCCTGAAGGCTGTCCTGAGAAAGTATATGAGCTCATGAGGGCAT
Seq C2 exon
GCTGGCAGTGGAGCCCCTCCGACAGGCCTTCCTTTGCTGAGATCCATCAGGCGTTTGAGACGATGTTTCAGGAATCCAGCATATCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003875-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(24.6=100)
A:
PF0771412=Pkinase_Tyr=FE(20.2=100)
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCGCTGCCAGAAACTG
R:
CGTCTCAAACGCCTGATGGAT
Band lengths:
246-399
Functional annotations
There are 1 annotated functions for this event
PMID: 9168116
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mass detection of residue modification, mutation analysis. ELM ID: ELMI000950; ELM sequence: IDLSQVY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]