BtaEX6046852 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101429824-101436405:+
Coord C1 exon
chr11:101429824-101429976
Coord A exon
chr11:101434329-101434500
Coord C2 exon
chr11:101436266-101436405
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCTGTTTTGCTCAGGTG
3' ss Score
9.28
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATACCTCTAACCTGTTCGGAAACAGTGGAGCCAAGACATTTGGCGGATTTGCCAGCTCATCATTTGGAGACCAGAAGCCTGCTGGCACTTTCAGCTCTGGAGGAGGAAGCGTGGCCTCCCAAGGCTTTGGGTTTTCTACTCCAAATAAAACAG
Seq A exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGCACTGCTGCCGCCAGCGCGGGAGGATTCGG
Seq C2 exon
GTTCGGGAGCAGCAGCAGCACCACGTCGTTTGGCACCCTTGCCAGTCAGAACGCACCGACTTTTGGATCGCTGTCCCAGCAGTCTTCTGGGTTTGGGAGCCAGAGCGGGGGATTCTCAGGCTTCGGATCAAGCGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896-'41-41,'41-40,42-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.362 C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGAAACAGTGGAGCCAA
R:
CTGGCTCCCAAACCCAGAAGA
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]