GgaEX1040916 @ galGal4
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6124780-6129840:+
Coord C1 exon
chr17:6124780-6124929
Coord A exon
chr17:6126471-6126642
Coord C2 exon
chr17:6129698-6129840
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCTGTTTTGCTCAGGTG
3' ss Score
9.28
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATTCTTCTAGCTTATTTGGGAACAGTGGAGCCAAGGCCTTTGGATTTGGCAACTCATCTTTTGGAGACCAGAAACCCACAGGCACTTTCAGCTCTGGTGGTGGCAGTGTGGCATCTCAAGGCTTTGGGTTCTCTAGTCCAACCAAAGCAG
Seq A exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCCACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAACCTTTTCAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGCGAGGGTACAGCTGCAGCCAGCGCCGGAGGATTTGG
Seq C2 exon
GTTTGGTGGTACCAGTAACAACACAGCATCATTTAGCACGCTAGCAAATCAGAATACCCCGACGTTTGGATCGCTGTCACAGCAGGGTACTGGTTTTGGCACACAGAACAGTGGATTCTCTGCTTTCGGGACAGTTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830-'50-56,'50-55,52-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.397 C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGGAACAGTGGAGCCAA
R:
TGTGTGCCAAAACCAGTACCC
Band lengths:
242-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]