GgaEX1040916 @ galGal3
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
NA
Coordinates
chr17:6746024-6751087:+
Coord C1 exon
chr17:6746024-6746173
Coord A exon
chr17:6747717-6747888
Coord C2 exon
chr17:6750945-6751087
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCTGTTTTGCTCAGGTG
3' ss Score
9.28
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATTCTTCTAGCTTATTTGGGAACAGTGGAGCCAAGGCCTTTGGATTTGGCAACTCATCTTTTGGAGACCAGAAACCCACAGGCACTTTCAGCTCTGGTGGTGGCAGTGTGGCATCTCAAGGCTTTGGGTTCTCTAGTCCAACCAAAGCAG
Seq A exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCCACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAACCTTTTCAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGCGAGGGTACAGCTGCAGCCAGCGCCGGAGGATTTGG
Seq C2 exon
GTTTGGTGGTACCAGTAACAACACAGCATCATTTAGCACGCTAGCAAATCAGAATACCCCGACGATAAGATCGCTGTCACAGCAGGGTACTGGTTTTGGCACACAGAACAGTGGATTCTCTGCTTTCGGCACAGATAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830-'56-64,'56-63,57-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.483 C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGGAACAGTGGAGCCAA
R:
TGTGTGCCAAAACCAGTACCC
Band lengths:
242-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]