MmuEX0032774 @ mm9
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31897937-31906668:+
Coord C1 exon
chr2:31897937-31898089
Coord A exon
chr2:31902923-31903094
Coord C2 exon
chr2:31906529-31906668
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCTGTTTTGCTCAGGTG
3' ss Score
9.28
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATACCTCTAATCTGTTTGGAAACAGTGGAGCTAAGACATTTGGAGGGTTTGGCAGCTCATCCTTCGGGGAACAGAAGCCTGCCGGCACATTCAGCTCTGGCGGTGGGAGCGTAGCATCCCAAGGTTTTGGATTTTCCACTCCAAATAAAACAG
Seq A exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGTACTGCGGCTGCCAGCGCAGGCGGATTCGG
Seq C2 exon
GTTCGGGAGCAGCGGCAATACTGCATCCTTCGGTACCCTCGCCAGTCAGAACGCACCCACCTTCGGGTCCTTGTCCCAGCAGACCTCAGGCTTTGGGACCCCGAGCAGTGGATTCGCTGGGTTTGGATCGGGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-'44-54,'44-52,46-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.362 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGAGGGTTTGGCAGCTC
R:
ATCCAAACCCAGCGAATCCAC
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: