RnoEX0061736 @ rn6
Exon Skipping
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11061338-11069378:+
Coord C1 exon
chr3:11061338-11061487
Coord A exon
chr3:11065477-11065648
Coord C2 exon
chr3:11069239-11069378
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCTGTTTTGCTCAGGTG
3' ss Score
9.28
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATACCTCTAACCTGTTCGGGAACAGCGGAGCTAAGACCTTCGGAGGGTTCGGCTCCTCCTTCGGGGAGCAGAAGCCTGCTGGCACATTCAGCTCTGGTGGTGGGAGCGTGGCATCCCAAGGTTTTGGATTTTCCACTCCAAATAAAACAG
Seq A exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGTACTGCGGCCGCCAGCGCAGGAGGATTCGG
Seq C2 exon
GTTCGGGAGTAGCAGCAACACTGCATCCTTCGGTACCCTCGCCAGTCAGAACGCACCCACTTTCGGATCCTTGTCCCAGCAGACCTCTGGCTTCGGGACCCCGAGCAGTGGATTCTCTGGGTTTGGATCAGGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=0.379 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTTCGGCTCCTCCTTC
R:
GTGCCTGATCCAAACCCAGAG
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]