BtaEX6046855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101406494-101425510:+
Coord C1 exon
chr11:101406494-101408308
Coord A exon
chr11:101410070-101410140
Coord C2 exon
chr11:101425354-101425510
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTTTATTTTATAGGTT
3' ss Score
11.76
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGGGCACGTGGCCGCCAGCACTGCCCCCAGCCTGTTTGGGCAGCAGACAGGCAGCATGGCCAGCACAGCGGCCGCCGCGCCACAGGTCAGCAGCTCAGGGTTTGGCAGCCCTGCCTTTGGCACCTCCACCCCAGGGGTCTTCGGACAGCCGGGCTTTGGGCAGGCCCCGGCCTTCGGGCAGTCGACCAGCAGCCCCGCGAGCAGCTTTTCCTTCAGTCAGCCTGGGTTCAGCTCTGTGCCTGCTTTTGGTCAGTCCGTGTCCTCCACCCCTACGTCCACCAGCGGGAATGTCTTTGGAGCCTCTTCGAGCACCAGTAGCTCCAGCTCCTTCTCTTTTGGACAGTCATCTACCAACAACGGAGGTGGGCTCTTTGGCCAGAACAACCCTCCTGCTTTTGGTCAGAGTCCTGGCTTTGGGCAGGGAGGCTCCGTGTTTGGTGGCACCTCGGCCGCCACCACAACAGCATCATCCTCTGGCTTTAGCTTCTGTCAAGCTTCAG
Seq A exon
GTTTTGGGTCTAGTAATACTGGTTCTTTGTTTGGTCAAGCAGCCAGTACCAGTGGAACAGTCTTTGGCCAG
Seq C2 exon
CAGTCGTCCTCTTCCAGCGGCAGCGTGTTTGGGTCTGGAAACGCTGGAAGAGGGGGAGGCTTCTTCAGCGGCCTCGGAGGAAAACCCAGCCAGGATGCAGCCAACAAAAACCCGTTCAGCTCGGCCAGCGGGGGCTTTGGGTCCACAGCTACCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896-'36-36,'36-34,37-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=0.083 C2=0.528
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCTCCTGCTTTTGGTC
R:
CTCTTCCAGCGTTTCCAGACC
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]