DreEX6014782 @ danRer10
Exon Skipping
Gene
ENSDARG00000016212 | nup214
Description
nucleoporin 214 [Source:ZFIN;Acc:ZDB-GENE-110203-3]
Coordinates
chr5:71176314-71178954:+
Coord C1 exon
chr5:71176314-71176832
Coord A exon
chr5:71177635-71177711
Coord C2 exon
chr5:71178939-71178954
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGTCGTTCAGGGT
3' ss Score
9.4
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGCATCATCTTCTTCTTCAGTTCCAGCGGTGGTGTCCACAGTATCTCCAACACCAGTGTTTTCTTCTGCACCATCCTCCACCTCAGCGTTCGGATCTTCTGCTTTTGGCTCCAGCTCTGCCTCCTCCGGCTTCGGCAAACCCACTTTCGGCCAGAGTGCTGGTTTTGGGCCTCCGGCTGCATCTGGCTCCGCTAGCGGCTTCAGTTTTGGTCAGCCAGCATTCAGTGCTAGCAGCAGCTCTGGGTTTGGGTCGCCGGCTGCGTCCGCCAGTACTGCGGCCCCCAGCAGTGTTTTCGGGCCCTCCACAGCTAGCAACGCCGGGTCCTTCTCATTCGGGGCCACCGGCTCCGGCTCCACAGCTAGCACCGGCACCGGCCTCTTTGGTCAGAGCAGCACTTCTGGCTTCGGGCAGCCCAGCGCAGGCTTCGGTCAGGGGGCTGTTTTCGGCAGTAACACCACCACTGCGTCTTCTTCTGGATTCAGCTTCGGACAACCGTCAG
Seq A exon
GGTTTGGCAGCAGCACCTCCTCTTCCTCCACATCTGTGTTCGGACAGCAGGCCAGTGGAGCAGGAGTCTTCGGTCAG
Seq C2 exon
TTATACACACATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016212-'44-53,'44-51,47-53=AN
Average complexity
A_C2
Mappability confidence:
73%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]