MmuEX6100458 @ mm9
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31888723-31894996:+
Coord C1 exon
chr2:31888723-31890489
Coord A exon
chr2:31893622-31893692
Coord C2 exon
chr2:31894843-31894996
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTGTGTCTTACAGGTT
3' ss Score
12.73
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TAACACAGCCACTGCGCCCTCTGCCACCCCTGTGTTTGGGCAAGTGGCAGCCAGCATAACCAGCACAGCCGCTGCCACACCACAGGCCAGCAGTTCAGGGTTTGGCAGCCCTGCATTTGGTGCTTCAGCTCCTGGAGTGTTCGGACAGACAGCATTTGGGCAGACCCCAGCCTTTGGGCAAGCAACAAGCAGCCCTGCCAGTGGCTTCTCCTTCAGCCAGCCTGGGTTCAGTTCCGTGCCTGCTTTCGGCCAGTCTGTCTCCTCTACCCCCGCATCCACCAGTGCAAATGTCTTTGGAGCCACCTCGAGTACCAGCAGTCCTGGTTCCTTCTCATTTGGACAGGCTTCTACCAATACAGGAGGGACGCTGTTTGGTCAAAACAACCCTCCTGCTTTTGGTCAGAGCCCTGGCTTTGGGCAGGGAAGCTCTGTGTTTGGTGGCACCTCGGCCACTACCTCTACAGCAGCACCTTCAGGGTTTAGCTTTTGTCAAGCCTCCG
Seq A exon
GTTTTGGGTCTAGTAATACTGGTTCTGTGTTTGGCCAGGCAGCCAACACTGGTGGGTCAGTCTTTGGCCAG
Seq C2 exon
TCATCCACTTCCAGTGGTGGCGTGTTTGGGTCTGGAAATGCTACAAGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACCCCTTCAGCTCAGCCGGTGGGGGCTTTGGATCTACAGCTGCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-'41-47,'41-45,42-47=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=0.236 C2=0.668
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAAAACAACCCTCCTGC
R:
GCCCCCTCTTGTAGCATTTCC
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: