RnoEX6016400 @ rn6
Exon Skipping
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11045327-11057803:+
Coord C1 exon
chr3:11045327-11047081
Coord A exon
chr3:11050035-11050105
Coord C2 exon
chr3:11057650-11057803
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTGTGTTTTACAGGTT
3' ss Score
12.85
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TAACACGGCCACTGCACCCTCCGCCACCCCCGTGTTTGGGCAAGTGGCAGCCAGCATAGCCAGCACAGCCGCTGCCACGCCACAGGCCAGCAGTTCAGGATTTGGCAGCCCTGCGTTTGGTGCTTCGGCTCCTGGAGTGTTCGGACAGACAGCATTTGGGCAGTCCCCAGCCTTTGGGCAAGCAACAAGCAGCCCTGCGAGTGGCTTCTCCTTCAGCCAACCTGGGTTCAGCTCTGTCCCTGCTTTTGGCCAGTCTGTCTCCTCCACCCCCACATCCACCAGTGCCAATGTCTTCGGAGCCACCTCAAGTACCAGCAGCCCTGGTTCCTTCTCATTTGGACAGGCTTCTACCAATACAGGAGGGACGCTATTTGGCCAAAACAACCCTCCTGCTTTTGGTCAGAGCCCGGGCTTTGGGCAGGGAGGCTCTGTGTTTGGTAGCACCTCGGCCACTACCTCTACAGCAGCACCTTCAGGGTTTAGCTTTTGTCAAGCCTCCG
Seq A exon
GTTTTGGGTCTAGTAATACTGGTTCTGTGTTTGGTCAGGCAGCCAGTAGCGGTGGGTCAGTCTTTGGCCAG
Seq C2 exon
TCATCCACTTCCAGTGGCAGCGTGTTTGGGTCTGGAAATGCTACAAGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGGTCTACGCCTACACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393-'31-40,'31-37,33-40=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=0.042 C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000037164fB9983
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCTCTGTGTTTGGTAGC
R:
CATCCTGGCTGGGTTTTCCTC
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]