GgaEX1040922 @ galGal4
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6118678-6122552:+
Coord C1 exon
chr17:6118678-6120423
Coord A exon
chr17:6121820-6121890
Coord C2 exon
chr17:6122396-6122552
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTTTTCTTGGCAGGTT
3' ss Score
11.07
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
ACCATCTGTTTTTGGCCAACTGCCTGCAGGTACCACAGCATCAGCTCCATTTGGACAACCCACCACTGCCACCGTGACCACACCGACTGCCAGCACAGGGTTTGGTACTTCTGCATTTGGCACCACCACGACTGGGGGCTTTGGTCAGCCAGCCTTTGGCCAAGCACCGACCTTTGGGCAGCCAGCAAGCAGTTCTTCAAGTGGTTTTACCTTCAACCAGTCTGGATTTGGGACAGTGCCTGCCTTTGGCCAGCCAGCAGCTTCCACTGCAGCGTCAAGCAGCGGCAATGTATTTGGAGCATCTTCTAGCACCAACAGTGCAAGCTCCTTCTCCTTCGGACAGCCATCTGCCAGCACTGGGGGCGGGATGTTTGGTCAAAGCAACACTCTCGTGTTTGGGCAAAGCAGCAGCTTTGGGCAAGGGGGATCTGTCTTTGGTAACACCGCCGCTGTGACTACCACTACATCATCTGCTGGGTTCAGCTTCTGCCAGGCCTCAG
Seq A exon
GTTTTGGTTCTAGCAACACAGGTTCTGTGTTTGGGCAAGCAGCAAATACTGGAGGCATTGTCTTTGGGCAG
Seq C2 exon
CAGTCGTCATCTTCCACTGGAGGCCTCTTTGGATCTGGAAGTGGTGGGAGAGGTGGAGGCTTCTTCACTGGTTTGGGAGGAAAGCCAAGTCAGGATGCAGCCAATAAGAATCCTTTTGGTTCCTCCAGTGGAGGATTTGGATCGGCAGCTTCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830_CASSETTE7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.042 C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000006070fB10117
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGGGATCTGTCTTTGG
R:
TGCATCCTGACTTGGCTTTCC
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]