BtaEX6046874 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101356611-101359745:+
Coord C1 exon
chr11:101356611-101356717
Coord A exon
chr11:101357338-101357404
Coord C2 exon
chr11:101359619-101359745
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCCGGTTTTATTCTTTGAAGGGA
3' ss Score
6.34
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAAAAGAGGAAAAGCACCCTGAGGTGTTTATGAACTTCATGGAGCCCTGTTACGGCAGCTGTACGGAGAGGCAGCATCGTTACTACCTCAGCTACATTGAAGAGTG
Seq A exon
GGATTTAGTGCTGGCAGCATCCGCGGCTTCCACAGAAGTCAGCATCCTCGCGCGACAGAGCAGCCAG
Seq C2 exon
AATAGTTGGGAATCTTGGCTGTTGGAGGACTCTAGTCGAGCTGAACTGCCTGTGACAGACAAGAGTGATGATTCCTTGCCCATGGGAGTTGCCATAGATTACACTAACCAAGTGGAAATCACCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATGGAGCCCTGTTACGG
R:
TATGGCAACTCCCATGGGCAA
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]