GgaEX1040918 @ galGal4
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6097190-6098488:+
Coord C1 exon
chr17:6097190-6097296
Coord A exon
chr17:6097696-6097762
Coord C2 exon
chr17:6098365-6098488
Length
67 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGTCCAACCTTACAGGGA
3' ss Score
8.95
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AAAAAGGAAGAGAAGCGACCAGAGAAGTTTGTGAATTTCATGGAGCCTTGTTATGGAAGCTGTGCTGAAAGACAACATCATTACTACCTCAACTATGTTGAGGAATG
Seq A exon
GGATCTAATTCTGGCAGCTTCAGCTGCTTCCACAGAAGTCAGCATTCTTGCCAGGCAAGGAGATCAG
Seq C2 exon
AACTGGGAATCATGGATTTTGGAGGACTCCAGCAGAGCAGAACTTCCTGTGACAGATAAAAGTGATGATACTTTGCCTGTTGGTGTTGCTGTAGACTACACCAATAACATGCCTATCCCGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCAGAGAAGTTTGTGAA
R:
AGCAACACCAACAGGCAAAGT
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]