GgaEX1040918 @ galGal3
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
NA
Coordinates
chr17:6720695-6721993:+
Coord C1 exon
chr17:6720695-6720801
Coord A exon
chr17:6721201-6721267
Coord C2 exon
chr17:6721867-6721993
Length
67 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGTCCAACCTTACAGGGA
3' ss Score
8.95
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AAAAAGGAAGAGAAGCGACCAGAGAAGTTTGTGAATTTCATGGAGCCTTGTTATGGAAGCTGTGCTGAAAGACAACATCATTACTACCTCAACTATGTTGAGGAATG
Seq A exon
GGATCTAATTCTGGCAGCTTCAGCTGCTTCCACAGAAGTCAGCATTCTTGCCAGGCAAGGAGATCAG
Seq C2 exon
CAGAACTGGGAATCATGGATTTTGGAGGACTCCAGCAGAGCAGAACTTCCTGTGACAGATAAAAGTGATGATACTTTGCCTGTTGGTGTTGCTGTAGACTACACCAATAACATGCCTATCCCGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830-'8-9,'8-8,9-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGAGCCTTGTTATGGAAGC
R:
CTACAGCAACACCAACAGGCA
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]