DreEX6014797 @ danRer10
Exon Skipping
Gene
ENSDARG00000016212 | nup214
Description
nucleoporin 214 [Source:ZFIN;Acc:ZDB-GENE-110203-3]
Coordinates
chr5:71146016-71146784:+
Coord C1 exon
chr5:71146016-71146122
Coord A exon
chr5:71146213-71146279
Coord C2 exon
chr5:71146658-71146784
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCTGTTGTTGTCCGGCGCAGGGA
3' ss Score
8.45
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAAAAGGATGAGAAGAGAGACGAGCGCTACCTGAACTTCAATGATCTGGTGTACGGCACCTGCACTGAGAGACAGCACCATTATTACCTGTGCCACATCGAGGACTG
Seq A exon
GGATCTGGTTTTGGCTGCTTCAGCTGCTGCTATTGAGGTCAGCATCATCGCCAAACAAGAGGACAAG
Seq C2 exon
GTGAACTGGGAGCTGTGGCTGCTGGAAGACGCCAGTCGAGCGGAGCTTCCTGTCACGGAGAACAGCGAGGACACTCTTCCTGTGGGCGTGGCCATCGATTACACCAGCCAGGAGGACATTCAACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016212-'10-16,'10-15,11-16=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAAGAGAGACGAGCGCT
R:
AGGAAGAGTGTCCTCGCTGTT
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]