MmuEX6100472 @ mm10
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31988154-31990361:+
Coord C1 exon
chr2:31988154-31988260
Coord A exon
chr2:31989073-31989139
Coord C2 exon
chr2:31990235-31990361
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGTTTTGTTTTTAAGGGA
3' ss Score
9.32
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAAAAGAAGAAAAGCATCCAGAAATATTTGTGAACTTCATGGAGCCCTGCTACAGCAGCTGCACAGAGAGACAACATCATTACTACCTCAGCTACATCGAGGAGTG
Seq A exon
GGATTTAGTGCTGGCAGCATCTGCAGCTTCTACAGAAGTTAGCATCCTTGCTCGACAAAATGATCAG
Seq C2 exon
ACTAATTGGGAATCTTGGCTGCTGGAGGACTCTAGTCGAGCTGAACTGCCTGTGACAGACAAGAGTGATGACTCCTTGCCCATGGGTGTTGCCATAGATTATACCAATGAAGTGGAAGTCACCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-'16-20,'16-19,21-20
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACTTCATGGAGCCCTGC
R:
CAACACCCATGGGCAAGGAG
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types