BtaEX6046878 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101352494-101354247:+
Coord C1 exon
chr11:101352494-101352692
Coord A exon
chr11:101353590-101353660
Coord C2 exon
chr11:101354184-101354247
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCTTCTCTGTCCAGTGT
3' ss Score
8.27
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCTAAACAGCAGAAACGTCCGTTTGCGTATCATAAGCTCTTGAAAGATGCGGGAGGCTTGGTGATTGACATGAAGTGGAACCCTGCGGTCTCCTCCATGGTGGCAGTTTGTCTGGCCGACGGCAGCATTGCAGTCCTACAAGTCACAGAGACAGTGAAAGTGTGTGCGACCCTTCCTTCCACAGTAGGAGTAACGTCTG
Seq A exon
TGTGCTGGAGCCCCAAAGGAAAGCAGCTGGCTGTGGGGAAGCAGAATGGAACTGTGGTCCAGTATCTTCCT
Seq C2 exon
ACTTTGCAAGAAAAAAAAGTCATTCCTTGTCCTCCATTTTATGAGGCAGACCATCCCGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCATGGTGGCAGTTTG
R:
ACGGGATGGTCTGCCTCATAA
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]