MmuEX0032775 @ mm9
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31835210-31838194:+
Coord C1 exon
chr2:31835210-31835408
Coord A exon
chr2:31836030-31836100
Coord C2 exon
chr2:31838131-31838194
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGGCAGCATTTTCTTTCCAGTAT
3' ss Score
4.91
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCTAAACCATTGAAACGTCCATTTACCTATCACAAGGTTTCAAACGATGCCAGCGGAATGGTGAATGATATGAAGTGGAACCCCACTGTCCCTTCCATGGTGGCAGTTTGTCTGGCTGATGGCAGTATTTCTGTCTTGCAAGTTACAGATGTGGTGAAAGTATGCGCCACACTTCCTCCTTCCACAGGAGTCACATGTG
Seq A exon
TATGCTGGAGCCCCAAAGGAAAGCAGCTGGCAGTAGGAAAGCAGAATGGAACTGTGGTCCAGTACCTTCCT
Seq C2 exon
ACTTTGCAGGAAAAAAAGGTCATTCCATGTCCTCCATTTTATGAGTCAGATCATCCTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-'6-6,'6-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(33.3=16.4)
A:
PF0040027=WD40=PD(63.6=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCATGGTGGCAGTTTGT
R:
CTCTGACAGGATGATCTGACTCA
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: