GgaEX0005111 @ galGal4
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6095489-6096770:+
Coord C1 exon
chr17:6095489-6095693
Coord A exon
chr17:6096306-6096376
Coord C2 exon
chr17:6096707-6096770
Length
71 bp
Sequences
Splice sites
3' ss Seq
AGGTCTCTTTTTTTCTTTAGTGT
3' ss Score
7.85
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCAAAACAGCAGAAGCGTATGTTTGCTTATCACAAGCTGGCCAAGGACTCAGGAAATGCAGCAATGGTCAATGACCTGAAGTGGAACCCTGCTAGTCCCACCATGGTGGCTGTCTGTCTGTCCGATGGCAGCATCTCTGTCCTGCAGGTCACAGACTCTGTGAAAGTGTATGCCACATTGCCTCCCTCAGTAGCTGTTACCTCTG
Seq A exon
TGTGTTGGAGCCCAAAGGGAAAACAACTGGCTGTAGGGAGGCAAAATGGCACTGTGGTGCAGTATCTGCCT
Seq C2 exon
AATCTGCAAGAGAAGAAAGTAATCCCTTATCCTCCCTTTTATCAGGCAGACAATCCTGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(35.3=17.4)
A:
PF0040027=WD40=PD(61.8=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAAGTGGAACCCTGCTA
R:
GCCTGATAAAAGGGAGGATAAGGG
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]