RnoEX0061742 @ rn6
Exon Skipping
Gene
ENSRNOG00000047244 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:9228531-9231608:-
Coord C1 exon
chr3:9231410-9231608
Coord A exon
chr3:9230757-9230827
Coord C2 exon
chr3:9228531-9228594
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGGCAGCATTTCCTCCCCAGTAT
3' ss Score
4.46
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCTAAACCACTGAAACGCCCATTTACCTATCACAAGCTTTCAAACGGTGCCAGCGGGATGGTGAATGATATGAAGTGGAACCCCACTGTCCCTTCCATGGCAGCAGTTTGTCTGGCTGATGGCAGCATTTCTGTCTTGCAAGTTACGGATGTGGTGAAAGTGTGCGCCACACTTCCTCCTTCATCGGGAGTCACGTGTG
Seq A exon
TATGCTGGAGCCCCAAAGGAAAGCAGCTGGCCGTGGGAAAGCAGAATGGAACTGTGGTCCAGTATCTTCCT
Seq C2 exon
ACATTGCAGGAAAAAAAGGTCATTCCATGTCCTCCGTTTTATGAGGCAGACCACCCTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047244_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(38.9=20.9)
A:
PF0040027=WD40=PD(58.3=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCATGGCAGCAGTTTGT
R:
ACAGGGTGGTCTGCCTCATAA
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]