DreEX6014800 @ danRer10
Exon Skipping
Gene
ENSDARG00000016212 | nup214
Description
nucleoporin 214 [Source:ZFIN;Acc:ZDB-GENE-110203-3]
Coordinates
chr5:71103184-71104075:+
Coord C1 exon
chr5:71103184-71103382
Coord A exon
chr5:71103778-71103848
Coord C2 exon
chr5:71104012-71104075
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTCTGGACCTGCAGTCT
3' ss Score
6.79
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GACGGACAGCAGAAGCGTCCCTTCTGCTCCTTCAGACCGCCGGCTTCTCCAAACACGCTGGTTCAGGATCTGAAGTGGAGTCCGGTGGACGCGTCCCGCCTGGCCGTCTGTCTGTCTGACGGCAGTATGATGGTGCTGGACGTCCAGGACTCGGTCACCGTGGTCGCTCAGCTTCCAGCATCTACAGGAATCACCTGCG
Seq A exon
TCTGCTGGAGTCCCAAAGGGAAGCAGGTTTCTGCTGGGAAACAAGACGCCACTGTGGTTCAGTTTACTCCG
Seq C2 exon
ACGTTACAGGCCAAGAAGGTGATCCCGTGTCCCAATTTCTACAGTCAGGATCACCCTGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016212-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCTGAAGTGGAGTCCGG
R:
GGACACGGGATCACCTTCTTG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]