BtaEX6046889 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101634087-101635397:+
Coord C1 exon
chr11:101634087-101634191
Coord A exon
chr11:101634340-101634532
Coord C2 exon
chr11:101635300-101635397
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCACCTTCTTGCTTCCAAAGATG
3' ss Score
7.76
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCCGGGCTGGCCCCCAGCATCCCCATCCTGCGGCGGGACCACCACATCCAGAGGGCCATCGGCCTCTCCCACATGTCCTTCCCTACCGCCGACCTCACTCTGAAG
Seq A exon
ATGGAGTCTGCGCGCAAGGCTTGGGAAAACTCGCCCAGCTTGCCGGAGCAGAGCTCGCCAGGAGGCGCCGGCTCAGGCCTGCAGCCCCCATCCTCCGGGGGAACCTCCAGCGGGGTCAGCTATAGCTCCTTTGGCGGCGTCTCCATGCCCCCCGTGCCAGTGGCCTCGGTCGCACCTTCTGCATCCCTTCCAG
Seq C2 exon
GCAGCCACCTGCCACCTCTCTACCTGGATGGCCATGTGTTTGCAAGTCAGCCCCGACTGGTTCCTCAGACCATACCTCAGCAGCAGAGTTTCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'32-44,'32-42,33-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.754 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCAGCATCCCCATC
R:
CTGTTGGAAACTCTGCTGCTGA
Band lengths:
194-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]