GgaEX0005024 @ galGal4
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6208881-6210904:+
Coord C1 exon
chr17:6208881-6208985
Coord A exon
chr17:6209560-6209752
Coord C2 exon
chr17:6210807-6210904
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATCGCCCTTCATTTCCATAGATG
3' ss Score
8.86
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCAGGGTTAACGCAGTCCATTCCCATTCTGCGAAGAGATCACCACCTTCAGAGGTGCATTGGCCTGAACCCAATGTCCTTCCCCACTGCAGAGCTTACTCTTAAG
Seq A exon
ATGGAGTCTGCTCGTAAGGCTTGGGAAAACTCTCCTAGTTTACCAGAACAGAACTCTCCAGGAGGTGCAGGCTCAGGCATCCAGCCTCCTTCCAGTGTTGGAGCTTCCAACGGTGTCAGCTACAGCTCTTTTGGCGGAGTTTCTATGCCTCCTATGCCTGTGGCGTCCGTAGCACCTTCTGCATCTATTCCAG
Seq C2 exon
GTAACCATATTCCCCCCCTGTATCTGGATGGCCACGTATTTGCAAGTCAGCCCCGTCTGGTTCCTCAGACGATACCTCAGCAGCAAAGCTACCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776_MULTIEX3-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.662 C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGTTAACGCAGTCCATT
R:
TGTTGGTAGCTTTGCTGCTGA
Band lengths:
202-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]